Search for: All records

Designing complex synthetic materials for enzyme immobilization could unlock the utility of biocatalysis in extreme environments. Inspired by biology, we investigate the use of random copolymer brushes as dynamic immobilization supports that enable supra-biological catalytic performance of immobilized enzymes. This is demonstrated by immobilizingBacillus subtilisLipase A on brushes doped with aromatic moieties, which can interact with the lipase through multiple non-covalent interactions. Incorporation of aromatic groups leads to a 50 °C increase in the optimal temperature of lipase, as well as a 50-fold enhancement in enzyme activity. Single-molecule FRET studies reveal that these supports act as biomimetic chaperones by promoting enzyme refolding and stabilizing the enzyme’s folded and catalytically active state. This effect is diminished when aromatic residues are mutated out, suggesting the importance of π-stacking and π-cation interactions for stabilization. Our results underscore how unexplored enzyme-support interactions may enable uncharted opportunities for using enzymes in industrial biotransformations.

 

Dormancy is an adaptation to living in fluctuating environments. It allows individuals to enter a reversible state of reduced metabolic activity when challenged by unfavorable conditions. Dormancy can also influence species interactions by providing organisms with a refuge from predators and parasites. Here we test the hypothesis that, by generating a seed bank of protected individuals, dormancy can modify the patterns and processes of antagonistic coevolution. We conducted a factorially designed experiment where we passaged a bacterial host (Bacillus subtilis) and its phage (SPO1) in the presence versus absence of a seed bank consisting of dormant endospores. Owing in part to the inability of phages to attach to spores, seed banks stabilized population dynamics and resulted in minimum host densities that were 30-fold higher compared to bacteria that were unable to engage in dormancy. By supplying a refuge to phage-sensitive strains, we show that seed banks retained phenotypic diversity that was otherwise lost to selection. Dormancy also stored genetic diversity. After characterizing allelic variation with pooled population sequencing, we found that seed banks retained twice as many host genes with mutations, whether phages were present or not. Based on mutational trajectories over the course of the experiment, we demonstrate that seed banks can dampen bacteria-phage coevolution. Not only does dormancy create structure and memory that buffers populations against environmental fluctuations, it also modifies species interactions in ways that can feed back onto the eco-evolutionary dynamics of microbial communities.

 

Low C-rate charge and discharge experiments, plus complementary differential voltage or differential capacity analysis, are among the most common battery characterization methods. Here, we adapt the multi-species, multi-reaction (MSMR) half-cell thermodynamic model to low C-rate cycling of whole-cell Li-ion batteries. MSMR models for the anode and cathode are coupled through whole-cell charge balances and cell-cycling voltage constraint equations, forming the basis for model-based estimation of MSMR half-cell parameters from whole-cell experimental data. Emergent properties of the whole-cell, like slippage of the anode and cathode lithiation windows, are also computed as cells cycle and degrade. A sequential least-square optimization scheme is used for parameter estimation from low-C cycling data of Samsung 18650 NMC∣C cells. Low-error fits of the open-circuit cell voltage (e.g., under 5 mV mean absolute error for charge or discharge curves) and differential voltage curves for fresh and aged cells are achieved. We explore the features (and limitations) of using literature reference values for the MSMR half-cell thermodynamic parameters (reducing our whole-cell formulation to a 1-degree-of-freedom fit) and demonstrate the benefits of expanding the degrees of freedom by letting the MSMR parameters be tailored to the cell under test, within a constrained neighborhood of the half-cell reference values. Bootstrap analysis is performed on each dataset to show the robustness of our fitting to experimental noise and data sampling over the course of 600 cell cycles. The results show which specific MSMR insertion reactions are most responsible for capacity loss in each half-cell and the collective interactions that lead to whole-cell slippage and changes in useable capacity. Open-source software is made available to easily extend this model-based analysis to other labs and battery chemistries. 

We examine the Fundamental Plane of black hole activity for correlations with redshift and radio loudness in both radio-loud and radio-quiet quasar populations. Sources are compiled from archival data of both radio-loud and radio-quiet quasars over redshifts 0.1 < z < 5.0 to produce a sample of 353 sources with known X-ray, radio, and black hole mass measurements. A Fundamental Plane of accretion activity is fit to a sample of radio-loud and radio-quiet quasars, and we find a dichotomy between radio-loud and radio-quiet sources. The set of best-fitting equations that best describe the two samples are log LR = (1.12 ± 0.06)log LX − (0.20 ± 0.07)log M − (5.64 ± 2.99) for our radio-loud sample and log LR = (0.48 ± 0.06)log LX + (0.50 ± 0.08)log M + (15.26 ± 2.66) for our radio-quiet sample. Our results suggest that the average radio-quiet quasar emission is consistent with advection-dominated accretion, while a combination of jet and disc emission dominates in radio-loud quasars. We additionally examine redshift trends amongst the radio-loud and radio-quiet samples, and we observe a redshift dependence for the Fundamental Plane of radio-loud quasars. Lastly, we utilize the Fundamental Plane as a black hole mass estimation method and determine it useful in studying systems where standard spectral modelling techniques are not viable.